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Abstract The geochemistry of tropical coral skeletons is widely used in paleoclimate reconstructions. However, sub‐aerially exposed corals may be affected by diagenesis, altering the aragonite skeleton through partial dissolution, or infilling of secondary minerals like calcite. We analyzed the impact of intra‐skeletal calcite on the geochemistry (δ¹⁸O, Sr/Ca, Mg/Ca, Li/Mg, Li/Ca, U/Ca, B/Ca, Ba/Ca, and Mn/Ca) of a sub‐aerially exposedPoritessp. coral. Each micro‐milled coral sample was split into two aliquots for geochemistry and X‐ray diffraction (XRD) analysis to quantify the direct impact of calcite on geochemistry. We modified the sample loading technique for XRD to detect low calcite levels (1%–2%; total uncertainty = 0.33%, 2σ) in small samples (∼7.5 mg). Calcite content ranged from 0% to 12.5%, with higher percentages coinciding with larger geochemical offsets. Sr/Ca, Li/Mg, Li/Ca, and δ¹⁸O‐derived sea‐surface temperature (SST) anomalies per 1% calcite were +0.43°C, +0.24°C, +0.11°C, and +0.008°C, respectively. A 3.6% calcite produces a Sr/Ca‐SST signal commensurate with local SST seasonality (∼1.5°C), which we propose as the cut‐off level for screening calcite diagenesis in paleo‐temperature reconstructions. Inclusion of intra‐skeletal calcite decreases B/Ca, Ba/Ca, and U/Ca values, and increases Mg/Ca values, and can therefore impact reconstructions of paleoclimate and the carbonate chemistry of the semi‐isolated calcifying fluid in corals. This study emphasizes the importance of quantifying fine‐scale calcite diagenesis to identify coral preservation levels and assure robust paleoclimate reconstructions. 

Abstract Robertsonian chromosomes are a type of variant chromosome found commonly in nature. Present in one in 800 humans, these chromosomes can underlie infertility, trisomies, and increased cancer incidence. Recognized cytogenetically for more than a century, their origins have remained mysterious. Recent advances in genomics allowed us to assemble three human Robertsonian chromosomes completely. We identify a common breakpoint and epigenetic changes in centromeres that provide insight into the formation and propagation of common Robertsonian translocations. Further investigation of the assembled genomes of chimpanzee and bonobo highlights the structural features of the human genome that uniquely enable the specific crossover event that creates these chromosomes. Resolving the structure and epigenetic features of human Robertsonian chromosomes at a molecular level paves the way to understanding how chromosomal structural variation occurs more generally, and how chromosomes evolve. 

Abstract Phages exert profound evolutionary pressure on bacteria by interacting with receptors on the cell surface to initiate infection. While the majority of phages use chromosomally encoded cell surface structures as receptors, plasmid-dependent phages exploit plasmid-encoded conjugation proteins, making their host range dependent on horizontal transfer of the plasmid. Despite their unique biology and biotechnological significance, only a small number of plasmid-dependent phages have been characterized. Here we systematically search for new plasmid-dependent phages targeting IncP and IncF plasmids using a targeted discovery platform, and find that they are common and abundant in wastewater, and largely unexplored in terms of their genetic diversity. Plasmid-dependent phages are enriched in non-canonical types of phages, and all but one of the 65 phages we isolated were non-tailed, and members of the lipid-containing tectiviruses, ssDNA filamentous phages or ssRNA phages. We show that plasmid-dependent tectiviruses exhibit profound differences in their host range which is associated with variation in the phage holin protein. Despite their relatively high abundance in wastewater, plasmid-dependent tectiviruses are missed by metaviromic analyses, underscoring the continued importance of culture-based phage discovery. Finally, we identify a tailed phage dependent on the IncF plasmid, and find related structural genes in phages that use the orthogonal type 4 pilus as a receptor, highlighting the evolutionarily promiscuous use of these distinct contractile structures by multiple groups of phages. Taken together, these results indicate plasmid-dependent phages play an under-appreciated evolutionary role in constraining horizontal gene transfer via conjugative plasmids. 

Abstract This paper describes a remotely monitored buoy that, when deployed in open water prior to freeze up, permits scientists to monitor not only temperature with depth, and hence freeze up and sea ice thickness, but also the progression of sea ice development—e.g., the extent of cover at a given depth as it grows (solid fraction), the brine volume of the ice, and the salinity of the water just below, which is driven by brine expulsion. Microstructure and In situ Salinity and Temperature (MIST) buoys use sensor “ladders” that, in our prototypes, extend to 88 cm below the surface. We collected hourly measurements of surface air temperature and water temperature and electrical impedance every 3 cm to track the seasonal progression of sea ice growth in Elson Lagoon (Utqiaġvik, Alaska) over the 2017/18 ice growth season. The MIST buoy has the potential to collect detailed sea ice microstructural information over time and help scientists monitor all parts of the growth/melt cycle, including not only the freezing process but the effects of meteorological changes, changing snow cover, the interaction of meltwater, and drainage. Significance Statement There is a need to better understand how an increasing influx of freshwater, one part of a changing Arctic climate, will affect the development of sea ice. Current instruments can provide information on the growth rate, extent, and thickness of sea ice, but not direct observations of the structure of the ice during freeze up, something that is tied to salinity and local air and water temperature. A first deployment in Elson Lagoon in Utqiaġvik, Alaska, showed promising results; we observed fluctuations in ice temperatures in response to brief warmings in air temperature that resulted in changes in the conductivity, liquid fraction, and brine volume fraction within the ice. 

Abstract Aim Understanding the considerable variability and drivers of global leaf photosynthetic capacity [indicated by the maximum carboxylation rate standardized to 25°C ( V c,max25 )] is an essential step for accurate modelling of terrestrial plant photosynthesis and carbon uptake under climate change. Although current environmental conditions have often been connected with empirical and theoretical models to explain global V c,max25 variability through acclimatization and adaptation, long‐term evolutionary history has largely been neglected, but might also explicitly play a role in shaping the V c,max25 variability. Location Global. Time period Contemporary. Major taxa studied Terrestrial plants. Methods We compiled a geographically comprehensive global dataset of V c,max25 for C 3 plants ( n  = 6917 observations from 2157 species and 425 sites covering all major biomes world‐wide), explored the biogeographical and phylogenetic patterns of V c,max25 , and quantified the relative importance of current environmental factors and evolutionary history in driving global V c,max25 variability. Results We found that V c,max25 differed across different biomes, with higher mean values in relatively drier regions, and across different life‐forms, with higher mean values in non‐woody relative to woody plants and in legumes relative to non‐leguminous plants. The values of V c,max25 displayed a significant phylogenetic signal and diverged in a contrasting manner across phylogenetic groups, with a significant trend along the evolutionary axis towards a higher V c,max25 in more modern clades. A Bayesian phylogenetic linear mixed model revealed that evolutionary history (indicated by phylogeny and species) explained nearly 3‐fold more of the variation in global V c,max25 than present‐day environment (53 vs. 18%). Main conclusions These findings contribute to a comprehensive assessment of the patterns and drivers of global V c,max25 variability, highlighting the importance of evolutionary history in driving global V c,max25 variability, hence terrestrial plant photosynthesis. 

There is a recent surge of interest in the behavior of active particles that can at the same time align their direction of movement and synchronize their oscillations, known as swarmalators . While theoretical and numerical models of such systems are now abundant, no real-life examples have been shown to date. We present an experimental investigation of the collective motion of the nematode Turbatrix aceti that self-propel by body undulation. We discover that these nematodes can synchronize their body oscillations, forming striking traveling metachronal waves, which produces strong fluid flows. We uncover that the location and strength of this collective state can be controlled through the shape of the confining structure; in our case the contact angle of a droplet. This opens a way for producing controlled work such as on-demand flows or displacement of objects. We illustrate this by showing that the force generated by this state is sufficient to change the physics of evaporation of fluid droplets, by counteracting the surface-tension force, which allow us to estimate its strength. The relatively large size and ease of culture make Turbatrix aceti a promising model organism for experimental investigation of swarming and oscillating active matter capable of producing controllable work. 

Native bee species in the United States provide invaluable pollination services. Concerns about native bee declines are growing, and there are calls for a national monitoring program. Documenting species ranges at ecologically meaningful scales through coverage completeness analysis is a fundamental step to track bees from species to communities. It may take decades before all existing bee specimens are digitized, so projections are needed now to focus future research and management efforts. From 1.923 million records, we created range maps for nearly 88% (3158 species) of bee species in the contiguous United States, provided the first analysis of inventory completeness for digitized specimens of a major insect clade, and perhaps most important, estimated spatial completeness accounting for all known bee specimens in USA collections, including undigitized bee specimens. Completeness analyses were very low (3–37%) across four examined spatial resolutions when using the currently available bee specimen records. Adding a subset of observations from community science data sources did not significantly increase completeness, and adding a projected 4.7 million undigitized specimens increased completeness by only an additional 12–13%. Assessments of data, including projected specimen records, indicate persistent taxonomic and geographic deficiencies. In conjunction with expedited digitization, new inventories that integrate community science data with specimen‐based documentation will be required to close these gaps. A combined effort involving both strategic inventories and accelerated digitization campaigns is needed for a more complete understanding of USA bee distributions.